PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596275.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 199aa    MW: 21880.7 Da    PI: 7.5316
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-1993127135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ C tt+TplWR+gp g+k+LCnaCG++++k+++
  XP_013596275.1  93 CATCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.33687123IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-1887139IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-1387126No hitNo description
Gene3DG3DSA:3.30.50.101.3E-1691127IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-1292124No hitNo description
PfamPF003206.2E-1793127IPR000679Zinc finger, GATA-type
PROSITE patternPS00344093118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MMGYQTNSNF SMFFSLENDD QNNQDYDSYN NPSSSTSVDC TLSLGTPSTR LDDHRRYSSA  60
SSNMTGDYFY HGGSAKTTSY KKGGGDHNLP RRCATCDTTS TPLWRNGPKG PKSLCNACGI  120
RFKKEERRAA ARNSITSGGG SSAAEIPAGG NYYNHHHYAS SSPSWAHPNT QRVQYFSPAP  180
EMEYPFVDDA TAASFLSWN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596275.11e-148PREDICTED: GATA transcription factor 20-like
RefseqXP_013729039.11e-148GATA transcription factor 20
SwissprotQ9ZPX01e-105GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078FFA31e-147A0A078FFA3_BRANA; BnaC07g03390D protein
TrEMBLA0A0D3D3191e-147A0A0D3D319_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DUE11e-147A0A3P6DUE1_BRAOL; Uncharacterized protein
STRINGBo7g010220.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-87GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]