PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596293.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 119aa    MW: 13724.7 Da    PI: 7.347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-0626602154
                    HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +Lr+ lP+ + + +s K+s + +L+++++YI++L
  XP_013596293.1 26 GKLRQFLPEiRERRRSDKVSASKVLQETCNYIRKL 60
                    69*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.039560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-62365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-62577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MSNRIRSRQS SSATRISDDQ MIDLVGKLRQ FLPEIRERRR SDKVSASKVL QETCNYIRKL  60
HREVDNLSDC LSLLLDSVDE DSQEAAVIRN LLIDVFFSYE LPSYGPALQQ LHLRLVCSL
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246407e-88BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596293.12e-80PREDICTED: transcription factor PRE5-like isoform X1
SwissprotQ9LJX16e-49PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0D3DBE44e-57A0A0D3DBE4_BRAOL; Uncharacterized protein
STRINGBo7g086990.16e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-38bHLH family protein