PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596384.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 155aa    MW: 17140.5 Da    PI: 10.7364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1967125155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIr+ +  +g ++    r +lg+f taeeAa a+++a+ +l g
  XP_013596384.1  67 KKFRGVRQRP-WGKWAAEIRCGKAhGGiRNggpVRLWLGTFETAEEAALAYDKAAIQLIG 125
                     59********.**********77755585578***********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.7E-371152IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.14E-2467132No hitNo description
SuperFamilySSF541712.42E-1868133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-2668133IPR001471AP2/ERF domain
PfamPF008475.3E-1368125IPR001471AP2/ERF domain
SMARTSM003804.5E-2968139IPR001471AP2/ERF domain
PROSITE profilePS5103220.78468133IPR001471AP2/ERF domain
PRINTSPR003671.9E-116980IPR001471AP2/ERF domain
PRINTSPR003671.9E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKRIVRISFT DVEATDSSSS EDDQTNTESP SRRKGKRFVK EIVIDPSDSA EVRKTRIKIR  60
IPARLKKKFR GVRQRPWGKW AAEIRCGKAH GGIRNGGPVR LWLGTFETAE EAALAYDKAA  120
IQLIGPHAPT NFGPESPAVK QDSDAGASAS FFCKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1767132462ATERF1
3gcc_A1e-1767132462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596384.11e-110PREDICTED: ethylene-responsive transcription factor ERF069
SwissprotQ9C9955e-58ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3D7821e-109A0A0D3D782_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBJ31e-109A0A3P6EBJ3_BRAOL; Uncharacterized protein
STRINGBo7g056530.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]