PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596505.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 25228.1 Da PI: 4.9585

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.3e-20	59	111	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_013596505.1 59 RKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 111 5899***********************************************95 PP
2	HD-ZIP_I/II	123.2	1.3e-39	57	147	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++++++++++rLe+e +L+e+l XP_013596505.1 57 RKRKLSDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNNLKNSHENVVADKCRLESELLQLKEQLY 147 8***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.3E-19	55	116	IPR001356	Homeobox domain
CDD	cd00086	6.59E-17	57	113	No hit	No description
PROSITE profile	PS50071	16.503	57	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-18	58	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-21	59	119	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-17	59	111	IPR001356	Homeobox domain
PRINTS	PR00031	6.0E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.0E-6	92	108	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MNHTMDDDQN LAFISQLYPD VYTQILPQEG AVKPPKRRRK KSKRAVATGD GSNCFFRKRK 60 LSDEQVNMLE MSFGDEHKLE SERKDKLAAE LGLDPRQVAV WFQNRRARWK NKRLEEEYNN 120 LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGASNSPIS SSVSVEANET 180 PFFGDYNVGD DGDDYNLFYP VPENTYIDGV EWANIYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	KRRRKKSKR
2	38	59	RKKSKRAVATGDGSNCFFRKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596505.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189549	1e-119	AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596505.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
Refseq	XP_013705721.1	1e-162	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-123	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0D3DI16	1e-160	A0A0D3DI16_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1H1	1e-160	A0A3P6F1H1_BRAOL; Uncharacterized protein
STRING	Bo7g118140.1	1e-161	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-95	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]