PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596508.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 131aa    MW: 14815.2 Da    PI: 10.565
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.11.5e-165891497
           NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    ++  + e+P++r+kki+k+d+d+++i +ea  l++ + elf+  l+ +s + a e+kr+t++   +  av+r + + dfl+d  p
  XP_013596508.1  5 EETTRPEFPITRVKKIMKVDKDINKINSEALHLVTYSSELFLRFLAEKSSVVAAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 89
                    5566789***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.84E-17877IPR009072Histone-fold
PfamPF008082.1E-191174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.7E-191289IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAEEEETTRP EFPITRVKKI MKVDKDINKI NSEALHLVTY SSELFLRFLA EKSSVVAAEK  60
KRKTVNLDHL RIAVKRHQPT SDFLLDSLPL PVPSAHPVRV TKTVSERNPP PVGTRRIDAF  120
FSKGKAKVDS P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971400.0KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596508.19e-90PREDICTED: nuclear transcription factor Y subunit C-8
RefseqXP_013651716.19e-90nuclear transcription factor Y subunit C-8-like
RefseqXP_013651717.19e-90nuclear transcription factor Y subunit C-8-like
TrEMBLA0A0D3D8K82e-88A0A0D3D8K8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EN012e-88A0A3P6EN01_BRAOL; Uncharacterized protein
STRINGBo7g065250.13e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-70nuclear factor Y, subunit C13