PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596539.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29517.2 Da    PI: 9.7129
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-272270250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rienk++rqvtfskRr+g+ KK +E+SvLCda+va+i+fs++gkl+eys
  XP_013596539.1 22 RIENKIRRQVTFSKRRTGLVKKVQEISVLCDADVALIVFSPKGKLFEYS 70
                    8***********************************************8 PP
2K-box85.31.3e-281001851499
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++e +kL + i+ ++r++Rhl+Ge+++ Ls++eLq Le qL++slk+iRs+Kn+l++e+i +lqkkekel+e +k+L+kk++
  XP_013596539.1 100 QGECSTECSKLLRMIDAMKRSLRHLKGEEVDALSIRELQGLEVQLDTSLKRIRSRKNQLMVESITQLQKKEKELKELKKQLTKKVD 185
                     567899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-361372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.9271373IPR002100Transcription factor, MADS-box
CDDcd002651.55E-371486No hitNo description
SuperFamilySSF554551.83E-301498IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-271535IPR002100Transcription factor, MADS-box
PfamPF003199.9E-252269IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273550IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-275071IPR002100Transcription factor, MADS-box
PfamPF014861.9E-23100184IPR002487Transcription factor, K-box
PROSITE profilePS5129715.122100190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MPLCVYSIFM QKMGRGRVQL RRIENKIRRQ VTFSKRRTGL VKKVQEISVL CDADVALIVF  60
SPKGKLFEYS AGSSMESILD RYERCSFAGQ NIPTPSLESQ GECSTECSKL LRMIDAMKRS  120
LRHLKGEEVD ALSIRELQGL EVQLDTSLKR IRSRKNQLMV ESITQLQKKE KELKELKKQL  180
TKKVDQREDI ETQNLSQGLA SLATPPCEPP HPLPEPISPN PPLPLGNISQ RNEVGEVDGG  240
TLIIRPTNTT LPHWMPRVTG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-181382169MEF2C
5f28_B8e-181382169MEF2C
5f28_C8e-181382169MEF2C
5f28_D8e-181382169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412380.0AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596539.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S72e-73AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A3P6F3C21e-180A0A3P6F3C2_BRAOL; Uncharacterized protein
STRINGXP_006395258.11e-139(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-116AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]