PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596574.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 186aa    MW: 21517.6 Da    PI: 8.6895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.2e-152677255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + +h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ L +Av+YI++Lq
  XP_013596574.1 26 KIMHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYINYLQ 77
                    568*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.7452476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-102681No hitNo description
SuperFamilySSF474593.4E-142692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-122777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-122891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-73082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADFQEKKRK RRKEVRVVSN EENLEKIMHR EVEKQRRQEM ASLYASLRSL LPLEFIQGKR  60
STSDQLNEAV NYINYLQRNI KDMSSKRDEL MLLSGQSFES RNKQSRNDNS NHVVIRPCLV  120
GVEIVFSVLQ TPLSSVLHVL SEHGLYVLSC FSSNVNGRLI HTLQAEVDDL ALVDFADLNV  180
YLLRLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611KKRKRR
2612KKRKRRK
3712KRKRRK
4813RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596574.11e-133PREDICTED: transcription factor bHLH118
RefseqXP_013705563.11e-133transcription factor bHLH118-like
RefseqXP_022563097.11e-133transcription factor bHLH118-like
SwissprotQ9STJ78e-83BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A0D3DG291e-131A0A0D3DG29_BRAOL; Uncharacterized protein
STRINGBo7g110280.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.14e-76bHLH family protein