PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596661.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 180aa    MW: 20040.7 Da    PI: 7.6732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-091663555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + +E++RR +++   +eL  llP+    +   l+  + L +A +YIk+Lq
  XP_013596661.1 16 RKTIEKNRRIQMKALSSELNALLPQT---SRAPLTLPDQLDEAANYIKKLQ 63
                    5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2451162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-81677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-81679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-51763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDQSLSNTSQ SRSVDRKTIE KNRRIQMKAL SSELNALLPQ TSRAPLTLPD QLDEAANYIK  60
KLQVNLEKMT ERKRKLAATG SSSMPSSVDV SVPRRLPKIE IQETGSILHV FLVTSVEHKF  120
IFHEIISVLS DESGAEITHA GSSTVDDTVF HTLHCKVEDC DYGASSRISE SLKKLVNNFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596661.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728781e-168AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410201e-168AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596661.11e-130PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-80BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A0D3DF771e-129A0A0D3DF77_BRAOL; Uncharacterized protein
STRINGBo7g107250.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-81bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]