PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596744.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26280.2 Da    PI: 7.4523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
  XP_013596744.1  9 KRIENVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
                    79***********************************************86 PP
2K-box48.53.7e-17841741096
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll.eqieelqkk...ekelqeenkaLrk 96 
                     +++  ++ ++e+ak  ++ie Lq   R+l+G+dL+s+s++eL+++  +Leksl+ +Rs+K+  l  + ie+l+     eke+ +e+ +Lr+
  XP_013596744.1  84 KQQFVQEVKNEMAKTLDQIELLQLHCRKLMGQDLDSCSVEELKEITIKLEKSLTIVRSRKQAKLNeDTIEKLKAEisgEKEVLNETSSLRQ 174
                     55667999***************999**********************************9877615677777543335666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-30370IPR002100Transcription factor, MADS-box
CDDcd002651.42E-40369No hitNo description
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-1685175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.45988185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVRGKIEIKR IENVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS  60
DMQKMMERYD IHRSEYFGAE RLQKQQFVQE VKNEMAKTLD QIELLQLHCR KLMGQDLDSC  120
SVEELKEITI KLEKSLTIVR SRKQAKLNED TIEKLKAEIS GEKEVLNETS SLRQMEYMLS  180
FQFEEPTLWM HSRSLESEMS GPSCGYGNMN ISDVKTELSI GLPESRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q7e-19169169Myocyte-specific enhancer factor 2B
1tqe_R7e-19169169Myocyte-specific enhancer factor 2B
1tqe_S7e-19169169Myocyte-specific enhancer factor 2B
5f28_A7e-19169169MEF2C
5f28_B7e-19169169MEF2C
5f28_C7e-19169169MEF2C
5f28_D7e-19169169MEF2C
6c9l_A7e-19169169Myocyte-specific enhancer factor 2B
6c9l_B7e-19169169Myocyte-specific enhancer factor 2B
6c9l_C7e-19169169Myocyte-specific enhancer factor 2B
6c9l_D7e-19169169Myocyte-specific enhancer factor 2B
6c9l_E7e-19169169Myocyte-specific enhancer factor 2B
6c9l_F7e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893092e-65AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596744.11e-167PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ9FLH54e-68AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A397KZK01e-131A0A397KZK0_BRACM; Uncharacterized protein
STRINGBo8g050720.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.11e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]