PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597017.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 509aa    MW: 58938.8 Da    PI: 5.9988
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.96.3e-20209262155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W   L  +F++av++L G++  +Pk+ile m+v +Lt+e+v+SHLQk+R+
  XP_013597017.1 209 KRRVVWDDYLNGKFLDAVNSL-GNNDVVPKKILERMNVSSLTRENVASHLQKFRM 262
                     689******************.9999****************************7 PP
2Response_reg41.85.6e-15361431108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d+++  +++l++ le+ +y ev+++ + e a+ ll++++  +D+ ++     + + ++l++ei +e  ++pii+ ++ ++ e +++ ++ G
  XP_013597017.1  36 VLLFDEDRHYLHILEKHLEEFQY-EVTTCHEEERAMYLLCNHRnmFDIAIMEAHNLEGKIFRLISEIGSEI-DIPIIITSQDDSRESVTKWMRNG 128
                     8999*******************.***************99999********99999999*******7766.8********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d+l Kp+ pe+l+
  XP_013597017.1 129 ACDYLIKPIRPEDLR 143
                     *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-2032155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-2133184No hitNo description
SMARTSM004482.0E-434146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.05335150IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-1036144IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.90E-1137143No hitNo description
SuperFamilySSF466892.33E-14207266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-20207266IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-21209262IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MLQKWKASSD QSGGPDRDLP NSPDMFSGNF PEGLRVLLFD EDRHYLHILE KHLEEFQYEV  60
TTCHEEERAM YLLCNHRNMF DIAIMEAHNL EGKIFRLISE IGSEIDIPII ITSQDDSRES  120
VTKWMRNGAC DYLIKPIRPE DLRLIYKYLV KKMELRGITV AEEAEEKAAA EKSSSVGDST  180
IRSPNRRKRN MLQTDEEDPD HNRDSATKKR RVVWDDYLNG KFLDAVNSLG NNDVVPKKIL  240
ERMNVSSLTR ENVASHLQKF RMGLKKKNDQ NKSDERNPSL ITPQERGMSS GEISNELYRG  300
LNVQFPTHHV NNIPQPSYFQ QHNTNLNLTT QRVSSPPGNH YDRLSVASSS RNLVTTHQHH  360
TSHQISEFPC NDQSIEERLV YYEDEDDGVK NLITDWFTQI PDQINLFPLE ESVITTTMRF  420
NDIQVSANRQ EPMYVHEPSM MHIPSLPSSL THNPFLDQKE NIQLVDLRRQ QLFREQQHAN  480
LANENRFPET NPGTGSARRD KMGQDRDQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16205266162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325780.0AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597017.10.0PREDICTED: two-component response regulator ARR14
RefseqXP_013706135.10.0two-component response regulator ARR14-like
TrEMBLA0A0D3DC610.0A0A0D3DC61_BRAOL; Uncharacterized protein
STRINGBo7g092630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.13e-76pseudo-response regulator 4