PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597228.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 219aa    MW: 24077.2 Da    PI: 6.6776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-094392253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + f+ Lr++lP       ++K   +e +  Av++Ik+
  XP_013597228.1 43 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVGGAVNFIKD 92
                    6679************************66...999999999**999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1238111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-83992No hitNo description
PROSITE profilePS5088811.6814193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-743110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-74392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDPYQNSNPR GNQEHMPFGS AGDGGSGGSD IPQGTVDNKQ KKKLLHRDIE RQRRQEMATL  60
FASLRDHLPL QYIKGKRAVS EHVGGAVNFI KDTETRIKEL SARRDELIRE TCYTSNPDLA  120
RTASELGNSV PASVMVQPCV SGFEVAVSSD SSGPQALPLS RVLEALQELG LEVISSLTTR  180
VNERLIHTIR VEVNSFGCLN LAWLQQKLVE ELIPSTGNI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597228.11e-162PREDICTED: transcription factor bHLH126-like isoform X1
SwissprotQ9STJ61e-100BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D3DG301e-159A0A0D3DG30_BRAOL; Uncharacterized protein
STRINGBo7g110290.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-103bHLH family protein