PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597259.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 105aa    MW: 11928.1 Da    PI: 10.9268
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.44.7e-141545535
            GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    +ttkTp+WR gp+ +k+LCnaCG++ rk+++
  XP_013597259.1 15 KTTKTPMWRGGPSCPKSLCNACGIRLRKQRR 45
                    79**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.0E-9446No hitNo description
PROSITE profilePS501149.17541IPR000679Zinc finger, GATA-type
SMARTSM004017.8E-11561IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.5E-11945IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.1E-121545IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEEEKKTVRC CSERKTTKTP MWRGGPSCPK SLCNACGIRL RKQRRSELLG IRIIHSHKAY  60
KKINPSPSSL SFSHGGVFLK KRRILKEEEQ AALCLLLLSR NSAFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597259.14e-71PREDICTED: GATA transcription factor 23-like
SwissprotQ8LC596e-39GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A3P6ESD53e-60A0A3P6ESD5_BRAOL; Uncharacterized protein
STRINGXP_006394919.11e-47(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.16e-37GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]