PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597302.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 168aa MW: 18607 Da PI: 5.2397

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.6	1.4e-26	6	109	2	100
DUF260 2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 CaaC ++ C+ + Cv+apyfp+++p+kf v+k+FG+ nv k+l++l ++ +r+ a+++l+yeAear++dP++G +g + +++ l++lk XP_013597302.1 6 CAACEFMTGPCTlgngNACVMAPYFPSTEPEKFDRVNKVFGVVNVYKILSRLeEPWQRQYAVNALCYEAEARIHDPIHGYLGPQMVYNNILNNLK 100 *********8555467******************************55667********************************** PP DUF260 92 aelallkee 100 e++++k+e XP_013597302.1 101 REIDSAKNE 109 *999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.05	4	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-25	6	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MNFAICAACE FMTGPCTLGN GNACVMAPYF PSTEPEKFDR VNKVFGVVNV YKILSRLEEP 60 WQRQYAVNAL CYEAEARIHD PIHGYLGPQM VYNNILNNLK REIDSAKNEL SITMAKKNQL 120 MGLPDVDARR NVDEIVGMRE NDQGDVHRAD GASTSSGPSS GPPNQNQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-26	4	110	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-26	4	110	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597302.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597302.1	1e-125	PREDICTED: LOB domain-containing protein 35-like
TrEMBL	A0A0D3DFG3	1e-105	A0A0D3DFG3_BRAOL; Uncharacterized protein
STRING	Bo7g108110.1	1e-105	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35900.1	9e-30	LOB domain-containing protein 35