PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597335.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 206aa    MW: 23271.5 Da    PI: 7.2168
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.64.2e-362076460
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     a+ cprCds+ntkfCyynnyslsqPry Ck+CrryWt+GG+lrn+P+Gg+ rk ++
  XP_013597335.1 20 PARVCPRCDSDNTKFCYYNNYSLSQPRYSCKNCRRYWTHGGTLRNIPIGGSGRKTNR 76
                    5789*************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027011.1E-312275IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7172276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDKLNVFVRG DNQVNEEKPP ARVCPRCDSD NTKFCYYNNY SLSQPRYSCK NCRRYWTHGG  60
TLRNIPIGGS GRKTNRPKID QPSAGNQQVN NHQPFLHGQE TNEFVGTFNG SSSSDVVVGN  120
HFGFHEIHGA MVNNVPPVRS FPPMEALHIS DVSSRQDYYD VGSSDLIDNP LINRPTEDDL  180
NMWNESYNNT MNVNHNASTS GRRGYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597335.11e-154PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA96e-69DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A0D3DF801e-152A0A0D3DF80_BRAOL; Uncharacterized protein
STRINGBo7g107280.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-67Dof-type zinc finger domain-containing protein