PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597397.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1549aa    MW: 174026 Da    PI: 8.7834
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-16157258298
                     EEE-..-HHHHTT-EE--.HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   2 fkvltpsdvlksgrlvlp.kkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +  lt+ dv++ +rl +  +k a ++            ++  l++ede+g++W + ++y + s+ y +t+GW+++v++++Lk+gDfv F++d+++
  XP_013597397.1 157 EICLTTIDVSNVDRLAVKaNKDAGKYfllatvvA---GTDSRLRFEDEEGKTWLFGFSYLNVSQCYEFTQGWSSYVEEKQLKAGDFVSFQRDRKD 248
                     5566777777777775531444556677774432...445579***********************************************99887 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + +l+++ ++
  XP_013597397.1 249 SSKLFIGCRK 258
                     7778877765 PP
2zf-CCCH22.42.1e-0714941516426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      +lCr + rtG C  G++C+F H+
  XP_013597397.1 1494 SLCRSYVRTGNCAVGPSCSFDHP 1516
                      69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-20153261IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-10155249No hitNo description
SMARTSM010193.5E-7156259IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-12156259IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-13157258IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983196260IPR003340B3 DNA binding domain
SMARTSM002551.5E-6301438IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.9E-19307465IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522003.79E-13307441IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010410.308349438IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.12E-39456721IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.1E-19478727IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3006.5E-7485628IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003645.2E-21495510No hitNo description
PRINTSPR003645.2E-21571585No hitNo description
PRINTSPR003645.2E-21662676No hitNo description
SuperFamilySSF467852.99E-5698802IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520587.82E-338231065IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.6E-288251065IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.8E-8885904IPR011713Leucine-rich repeat 3
PRINTSPR003645.2E-21974990No hitNo description
SuperFamilySSF520587.48E-199991078IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.48E-1911331234IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-1211351233IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010311.44114901518IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-514941516IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-414941515IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1549 aa     Download sequence    Send to blast
MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST  60
SSFATRSLEL PDRTSFRLLA AGGDGELDRI YKSLGVSGPD DLAISFDAWE ASKMRSSSGG  120
VGRFFKEHAS EKASEKERGE MNLNPNYHDD VREDLFEICL TTIDVSNVDR LAVKANKDAG  180
KYFLLATVVA GTDSRLRFED EEGKTWLFGF SYLNVSQCYE FTQGWSSYVE EKQLKAGDFV  240
SFQRDRKDSS KLFIGCRKSD ESFPNPTSPG ASIKTVEMRE KLKGVETPFQ PKLSEHSVTG  300
SDPVLVIYCG DKQVSEEIYL ISYIFNELCR CGFSPLRYDM KKGTVTENQK LLHISRVGII  360
IFSMNFAHSR ECLDGFVAVM DHLKANDLVL IPVFFKVSVS AVRGQLGSFG RAFIRLRNSV  420
KASEVLKWRA AMIELTSISG YAYKKGDEVI LAKNIVRAVC LPLSSETNMK LRGTRLSLES  480
ILSLLNRSQP SSPQIVGLWG MAGIGKTTIT REFFRTQAER YDVCYFLPDF HLMCQTKGLS  540
YLRDDFFSKI FGAEKVFVDA CDTKLRFTRD RFLGKKVLIV LDGVSSAKDA EVLVGGFGWF  600
SGGHTIILTS RNRQVLVQCN AKVIYEIEKL SKLESLHLCC KFASKENCKG RMSLTSELVD  660
YASGNPLALR VLGLSIQNQS MKDQKQHLRR LRQHPPVKIL DAFKISFNGR DGDEKSIFLD  720
LACFFRGEDR DRVVKILDGC GFSTDLGIYG LIDESLISLL DNKIEMPNIF QDAGRFVVCQ  780
EHEEPGNRSR LWDSSDIAGV LKNNTGTEAV EGIFLDASGL TFDLISTAFE RMYRLRLLKI  840
HCPTSVNHCK VCLPEGLHSL PDELRLLHWE KYPLGSLPRN FNPKNLVELN MPYSNLTKVW  900
KGTKNLEKLK RIILSHSQQL TKFPRLSKAR NLEHIDLEGC TSLVKVNSSI LHHHKLTFLS  960
LRNCSRLRVM PTTVHLKSLE VLNLSGCSEL ENLQDFSLNL KELYLAGAAI RELPSSIGDL  1020
TRLVTLDLEN CESLQHLPPG ISNLKAMMTL KLSGCSNLKS LPVLDALFLQ DSQRSNTRIT  1080
MEESVSINLH SAIQESSREA LEEFLPAFEC LSNNGIPQES WTWVTVIPFP SPILHSLASR  1140
LYALVSLFLC NAYLVDIPED ICWLASVMRL DLGGNSFSQI PKSIKEFRKL LSLNLRHCKN  1200
LKSLPELPRS LVTLNAHGCV SLKSFPTSFE QFPRHFTFSN CFNLSPKVVR KYIGKALDSV  1260
KGMAKRILQA SLEQEHINAP AFSICIPASA GHQSSFNFQA GSVVRRQLTP GMLKTLSGFA  1320
LSVVVEFWDN YSNNAGFGIK CICRKTRTDL SPRLERIFHC WAPKEPITVQ RDHMFVFGSV  1380
KMHHAEAVNH DFLSDSVTFE FHPVNSENQL LGDSCTVKRC GVYLITDATG NTTLSAKRPS  1440
SSMDSGGLSS MEHVAPPYKR CRLKGVIEIV ILSLRKRKRE MSVPTVKSFS KVKSLCRSYV  1500
RTGNCAVGPS CSFDHPTWVF TEKPKRLSAS KSNQATSGKD AIDTEQEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1815326911127DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114151419TVKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597397.10.0PREDICTED: disease resistance protein RRS1-like isoform X3
TrEMBLA0A0D3A4E00.0A0A0D3A4E0_BRAOL; Uncharacterized protein
STRINGBo1g021600.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.11e-163Disease resistance protein (TIR-NBS-LRR class)