PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597807.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 253aa    MW: 29163.6 Da    PI: 9.1069
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.83.5e-2276117142
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                     daepgrCrRtDGKkWRCs+++ +++k+CErH hrg++rs+++
  XP_013597807.1  76 DAEPGRCRRTDGKKWRCSKDASPDSKYCERHXHRGKNRSSRK 117
                     79*************************************985 PP
2QLQ55.81.4e-19641237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT +Q+++L++Q+l++KyLaan PvPp+Ll+ i++
  XP_013597807.1  6 PFTESQWEELENQALVFKYLAANIPVPPYLLFLIRR 41
                    8******************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-12541IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.658641IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.7E-14640IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.62976120IPR014977WRC domain
PfamPF088794.2E-1877117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTTRIPFTES QWEELENQAL VFKYLAANIP VPPYLLFLIR RPFLFSSSSY SSSSNFFSPH  60
FGWNVYEMGR DERKIDAEPG RCRRTDGKKW RCSKDASPDS KYCERHXHRG KNRSSRKPLP  120
PPPQFSVPST PSIFLDFSLA SSRAKSKRTG YMNDFFSIEP SGSIKSCSGL AMEEDGGSSK  180
YESLKQREKQ PDRSCFILGT ELGTLERPLM LEAKQKQRDD KDYEEEEQRS KIFYKFLDEW  240
PSSKSSGSTS LFI
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597807.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 6
SwissprotQ9ZQ121e-107GRF6_ARATH; Growth-regulating factor 6
TrEMBLM4DFB21e-159M4DFB2_BRARP; Uncharacterized protein
STRINGBra015184.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-100growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]