PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597847.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 241aa MW: 25957 Da PI: 10.337

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.3	7.6e-40	32	205	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++ XP_013597847.1 32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctlsssld 126 789**************************************************************9999977777777665555577778888 PP TCP 89 ..............................................kaaksaakskksqksaasalnlakesrakarar 121 ++++ +++++q+++a+al ++++++++a + XP_013597847.1 127 hkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfaSHQEMFLQQQQQQQQPAAALFVHQQQQQQAAMG 205 9999999999999999**************************96444444477777777777777777766666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-33	38	196	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSHGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT 120 LSSSLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ 180 QQQQQQQPAA ALFVHQQQQQ QAAMGEASAA RVGNYLPGHL NLLASLSGGA PGSGRREDDQ 240 R

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597847.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597847.1	1e-179	PREDICTED: transcription factor TCP7-like isoform X1
Swissprot	Q9FMX2	1e-105	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3DDC8	1e-177	A0A0D3DDC8_BRAOL; Uncharacterized protein
STRING	Bo7g097790.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-66	TCP family protein