PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598435.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 160aa    MW: 17740.9 Da    PI: 6.1503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1685134154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     +++kGVr+++ +g+W AeI+dp     +  +r +lg+f ta++Aa+a++ a  kl 
  XP_013598435.1  85 KKHKGVRQKP-SGKWSAEIWDP-----SlqRRRWLGTFPTAKMAAEAYDDAESKLV 134
                     589*****99.7*********9.....445********************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-2286150IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1486138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-2086138IPR001471AP2/ERF domain
PROSITE profilePS5103218.6186147IPR001471AP2/ERF domain
PfamPF008474.1E-986134IPR001471AP2/ERF domain
PRINTSPR003674.3E-68798IPR001471AP2/ERF domain
CDDcd000185.37E-2289139No hitNo description
PRINTSPR003674.3E-6109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDHSENIPSC DHKPPRLITR DQEHVIMVSA LLQVISNVRG DNSSSNSVAC EALHQPLDAG  60
PCPLCNITGC LGCAFPVHEE IEKEKKHKGV RQKPSGKWSA EIWDPSLQRR RWLGTFPTAK  120
MAAEAYDDAE SKLVKRKAAR SGTMNGDEPS IHREDDGEDE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598435.11e-117PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC91e-61EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A0D3DGA81e-114A0A0D3DGA8_BRAOL; Serine/threonine-protein phosphatase
TrEMBLA0A0D3DGB51e-115A0A0D3DGB5_BRAOL; Uncharacterized protein
STRINGBo7g111070.11e-115(Brassica oleracea)
STRINGBo7g111140.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.17e-55ERF family protein