PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598841.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 461aa    MW: 51449.1 Da    PI: 6.4354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12314360455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  XP_013598841.1 314 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 360
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4158233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-17310376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-14313364No hitNo description
PfamPF000104.1E-10314360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17314376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNVTGESMVG QKFWENQEDR AMVESAIGTE ACEFFISSNT SLPKLLPPPP PPPTDPNLQQ  60
GLRHVVEGSD WDYAVFWLAS NVNSSDGCFL IWGDGHYRAT QKGNSSDKED DETKRRVLSK  120
LHLSFTGSDE DHRLVKSGAL SDVDMFYLAS LYFYFRCDST KYGPAGTYVS GKPLWAADLP  180
SCLSYYRVRS FLARSAGFKT VLSVPVNCGV VELGSLKLIP EDKSVVEMVK SVFGGSDFVQ  240
APKIFGRQLS LGGSKPRSMS INFSPKMEDD SGFSLDAYEV GGSNQVEAAL YLTDEQKPRK  300
RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ  360
KKIRVYETEK QVMKRKESNQ ITPGDVDYQQ RHDDAVVRVS CPLETHPVSK VVQMFRENEV  420
TPHDTNVAVT EEGVVHTFTV RPQGGCTAEE LKEKLIASLS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-26308374268Transcription factor MYC2
5gnj_B5e-26308374268Transcription factor MYC2
5gnj_E5e-26308374268Transcription factor MYC2
5gnj_F5e-26308374268Transcription factor MYC2
5gnj_G5e-26308374268Transcription factor MYC2
5gnj_I5e-26308374268Transcription factor MYC2
5gnj_M5e-26308374268Transcription factor MYC2
5gnj_N5e-26308374268Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598841.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598841.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A0D3DEE20.0A0A0D3DEE2_BRAOL; Uncharacterized protein
STRINGBo7g104400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]