PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598972.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 351aa    MW: 39879.1 Da    PI: 7.5625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.7e-201697394
                    EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    + l   +++ks+ l +p kf++ h +g k+e+kt+tl++  s ++W+v++  ++++    lt+GWkeFv+a+ L++gDfvvF+l++++ f  +v
  XP_013598972.1 16 QPL--LSHSKSH-LNIPAKFFSGHiEG-KQEGKTVTLRSdASEKTWKVEM--KGQR----LTQGWKEFVEAHALRVGDFVVFRLERDMLF--NV 97
                    555..4556666.99*********744.457889***997889*******..7777....************************998888..44 PP
2B345.41.4e-14137236198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f++ + +s+++++g   lp +f++ +g++k++  ++++ d++g +W ++l++ k+  +     ++ ++GW+ F++ n++++g++++++l++  ++
  XP_013598972.1 137 FVTLTPTSSSFETGKQHLPANFTRGNGLIKPG--KIIMVDKKGDEWVMELKVGKTNVSimymyIMSRNGWRIFCDVNEVRAGESLTLELIR-GGE 228
                     5666778999*******************777..7***************88444444546655566**********************98.777 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     ++++k+++
  XP_013598972.1 229 SPMLKFCS 236
                     78999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-247104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.11311103IPR003340B3 DNA binding domain
CDDcd100175.25E-201298No hitNo description
SMARTSM010192.8E-2514103IPR003340B3 DNA binding domain
PfamPF023624.1E-152095IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-15132239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998137237IPR003340B3 DNA binding domain
SMARTSM010191.3E-19137238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-14137237IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-14137236IPR003340B3 DNA binding domain
CDDcd100179.74E-15137236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVNASLLSPA TPHFFQPLLS HSKSHLNIPA KFFSGHIEGK QEGKTVTLRS DASEKTWKVE  60
MKGQRLTQGW KEFVEAHALR VGDFVVFRLE RDMLFNVTAL GSSYCEIQYT PSGSRRQEEE  120
EESVGTEKEV EKNLTRFVTL TPTSSSFETG KQHLPANFTR GNGLIKPGKI IMVDKKGDEW  180
VMELKVGKTN VSIMYMYIMS RNGWRIFCDV NEVRAGESLT LELIRGGESP MLKFCSEMEQ  240
APFEAEACAH KRAKWSQEIR EKTTEEGEPS HRARASNKTN ANQENLQNKQ PCSVSDLLTE  300
VKHSVVSTLT SIRQCREELK TKEQELEDSL QEINNLERKI QRNKTTSSSN N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598972.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A3P5ZUL80.0A0A3P5ZUL8_BRACM; Uncharacterized protein
STRINGBra023990.1-P0.0(Brassica rapa)
STRINGBo7g115310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2333634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-84B3 family protein