PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599156.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 367aa    MW: 40757.9 Da    PI: 5.5139
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.51.5e-31146246198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+Dei++LqG++df++++g +ps+++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ +k+ +qk+fel
  XP_013599156.1 146 KMFQRLFSETDEIAMLQGFLDFTSTKG-DPSENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNslkrGKTEDQITYAKDLEQKTFEL 239
                     58*************************.9*************************************9999887778999**************** PP

          DUF573  92 skkiWgs 98 
                     s+kiWgs
  XP_013599156.1 240 SRKIWGS 246
                     *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-25148245IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAPKQTDKIE NPPVASSSEE EEEESGSSVE ESNSSDDEAG DVQSKLTQKK PVAPPPAAKK  60
PESDSEEESE SDSDSEPATK TKPLNAVVTK PIPATLPESS KRSLKQADNE PKKKAKTSTT  120
EQAKKKPSTS AADEEVKKIS GEEAKKMFQR LFSETDEIAM LQGFLDFTST KGDPSENMDA  180
FCDYVKTLID FNASKAQIVT KLQRCKKKFV NIVKNSLKRG KTEDQITYAK DLEQKTFELS  240
RKIWGSDGVL PAKPRKKSKE VELLSTPKKE VEVETQKKVS VVDNHHLSES REMALFFKAE  300
NASVLGLDES SVSAVWDMVE DGEKKREMEE KLKKLKAKQM ELCLQRTSLV DYTAKMIFKN  360
NASSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116PKKKAKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410360.0AC241036.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599156.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB421e-105STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A0D3DG060.0A0A0D3DG06_BRAOL; Uncharacterized protein
STRINGBo7g110050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-90DNA-binding storekeeper protein-related transcriptional regulator