PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599255.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 900aa MW: 100336 Da PI: 7.2727

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	8.9e-29	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_013599255.1 602 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 652 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	605	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.01E-23	789	884	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-23	795	881	No hit	No description
SMART	SM00666	2.4E-27	797	882	IPR000270	PB1 domain
PROSITE profile	PS51745	28.53	797	882	IPR000270	PB1 domain
Pfam	PF00564	2.6E-19	799	881	IPR000270	PB1 domain
CDD	cd06407	3.94E-39	799	881	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN 60 NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA DKSLLEETER 120 GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP 180 HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR 240 IKEAQKCDVR GSLALPVFER GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE 300 NLKSPSSEVY NQFYHAALPE VSNFLASVCR SYDLPLALTW APCARQEGRG GSRHSDENFS 360 ECVSTVDSAC FVLDQQSYHV QVACSEHHLL QGEGIVGKAF KRTKLFFVPE VTTFSKTNYS 420 LAHHAKISGL HAALAVPLKN KFNGSVEFVL EFFFPKTCLD TEAQQEMLKS LSVTLQNDFR 480 SLNLVIDKEL ELEVVFPVRE ELLFSEKPLP LEPLSLEEIS QEDSSWISHM IKANEKGKGV 540 SLSWEYQKEE PKEEFMLTSG WDNNNQICLG RGHSSFDSAS FGVGQPLLGS RRQGEKRRTK 600 TEKTIGLEVL RQYFAGSLKD AAKNIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ 660 LVIDSVQGVQ GSIQLDSFYT SFPELSSQNV TGTGTGTGTY FKNAQTENGV SAQGIASKSP 720 PSSSCSHSSG SSTCCSTEAN NTANTLTTLM AENAGEILKR ARSEVKLHTM EETKPISRTL 780 SHKTFSQHPL SSKAGGASKV KATFGEAKVR FTLLPTWGFR ELRHEIASRF NIDNNNIETF 840 DLKYLDDDKE WVLLTCEADL EECIDIYRSS QSRTIKISVH QASQVKLRGS FGSTGPGPSL

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN  60
NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA DKSLLEETER  120
GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP  180
HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR  240
IKEAQKCDVR GSLALPVFER GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE  300
NLKSPSSEVY NQFYHAALPE VSNFLASVCR SYDLPLALTW APCARQEGRG GSRHSDENFS  360
ECVSTVDSAC FVLDQQSYHV QVACSEHHLL QGEGIVGKAF KRTKLFFVPE VTTFSKTNYS  420
LAHHAKISGL HAALAVPLKN KFNGSVEFVL EFFFPKTCLD TEAQQEMLKS LSVTLQNDFR  480
SLNLVIDKEL ELEVVFPVRE ELLFSEKPLP LEPLSLEEIS QEDSSWISHM IKANEKGKGV  540
SLSWEYQKEE PKEEFMLTSG WDNNNQICLG RGHSSFDSAS FGVGQPLLGS RRQGEKRRTK  600
TEKTIGLEVL RQYFAGSLKD AAKNIGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ  660
LVIDSVQGVQ GSIQLDSFYT SFPELSSQNV TGTGTGTGTY FKNAQTENGV SAQGIASKSP  720
PSSSCSHSSG SSTCCSTEAN NTANTLTTLM AENAGEILKR ARSEVKLHTM EETKPISRTL  780
SHKTFSQHPL SSKAGGASKV KATFGEAKVR FTLLPTWGFR ELRHEIASRF NIDNNNIETF  840
DLKYLDDDKE WVLLTCEADL EECIDIYRSS QSRTIKISVH QASQVKLRGS FGSTGPGPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599255.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599255.1	0.0	PREDICTED: protein NLP2-like isoform X2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D3DHT2	0.0	A0A0D3DHT2_BRAOL; Uncharacterized protein
STRING	Bo7g117300.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein