PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599436.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 256aa    MW: 28648.9 Da    PI: 4.4026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM522.4e-16121464128
             NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka....eekewyfFskrdkkyatgkrknr..atksgyWkatgkdke 91 
                     ++rF Ptd e+++++L ++ ++  +   + i+ ++ +++ P++L+ +++++     ++ +y+F  ++ ++      +r  + + g Wk +gk ++
  XP_013599436.1  12 CLRFVPTDVEVIDQFLVPRHQHLLNLNRSLIRPFNFFRTAPQQLNlEATYGseyyPRRGLYWFLVERPASVIAVTGSRtlINRMGSWKRSGKPEN 106
                     68*****************99988666578**************9432222222234477999888887774444444224679*********** PP

             NAM  92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                     ++s +g   g+k+ + f     + ++p   kt W + ey++
  XP_013599436.1 107 IVS-GGIMLGTKQLFKFLytdpTTSKPANLKTGWSLYEYAI 146
                     ***.9***********98777767899999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.3989173IPR003441NAC domain
SuperFamilySSF1019411.18E-1810170IPR003441NAC domain
PfamPF023652.6E-813145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNLNPNPQGL YCLRFVPTDV EVIDQFLVPR HQHLLNLNRS LIRPFNFFRT APQQLNLEAT  60
YGSEYYPRRG LYWFLVERPA SVIAVTGSRT LINRMGSWKR SGKPENIVSG GIMLGTKQLF  120
KFLYTDPTTS KPANLKTGWS LYEYAIPDPP LPQTPTDDIL PVEPTVVVNV FYNVSDDEYR  180
RSGHAVPQEP VQVVEAEDNG EAAQGQEGHV EEDNGGAAQG QEGHVEEDND NNNNVVNDDE  240
DVFANLAPIA NIPNNI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599436.10.0PREDICTED: uncharacterized protein LOC106307109
TrEMBLA0A0D3A5X20.0A0A0D3A5X2_BRAOL; Uncharacterized protein
STRINGBo1g037810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-07NAC domain containing protein 28