PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600943.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 699aa    MW: 79932.8 Da    PI: 6.2266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.2e-1063206962373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ +ssgd+ +a+ lL+++++++sp gd+ qRla +ft+AL+arl++ s+ ++ +   + ++++++ ++ l+ +k+f  +sP++++ +
  XP_013600943.1 320 RTLLTLCAQSISSGDKLAADDLLNQIKKQCSPLGDASQRLAYFFTKALEARLQGsSGVKIQSYYDSITSKKRTAAQILKTYKAFLSASPFMTLIY 414
                     6799*************************************************97888888888999999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++e tg+rL+++++++gvpfe+++l++k++e+
  XP_013600943.1 415 FFSNKMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKIGPRKLRITGVELPQNGfrPTEKIEDTGRRLREYCKRFGVPFEYHALASKNWET 509
                     *********************************************************9************************************* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++lee++++p+E+laVn+vl+ ++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F++rf eal +ys+lfd++ ++l++e+ er
  XP_013600943.1 510 IRLEEFKIRPNEVLAVNSVLRFKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFATRFKEALFHYSSLFDMFGSTLSKENPER 604
                     **************************9999999889*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  E e++gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  +++ +  + + ++e+s+++++gWk+r L+s S+W
  XP_013600943.1 605 MHFEGEFFGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVERELVESFREKMKRWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 696
                     *************************************************************999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.029293676IPR005202Transcription factor GRAS
PfamPF035147.6E-104320696IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MMESNFYRIV NGHEYYDVSF LPNQIPDMGF GVPSSSDFDL RLDHHHQQPS SYWIPSTQQD  60
QDQYSPPGAD EIDSENTLLK YVNQLLMEEE TLSENQSLSS YDSLALRQTE EMLQQVINDS  120
LAQSSNSITS STSSGSSSGE YLNSNSNSCV RIETEANSTE SEALSDDHPH HVLDSGVVSF  180
QGPNMSRGYG QPANEILVRS IFSDADSVNQ FKRGLEEASK FLPNTDQWIF NPQHEVVSVK  240
AEKGFSRVRK HHHQEPEEEE ARRRKQSAVN VDDGNITELF DKVLLLDNQL DPQIKEETEN  300
VSSKKGGGRG KKKSKAVDFR TLLTLCAQSI SSGDKLAADD LLNQIKKQCS PLGDASQRLA  360
YFFTKALEAR LQGSSGVKIQ SYYDSITSKK RTAAQILKTY KAFLSASPFM TLIYFFSNKM  420
ILDASKDASV LHIIDFGILY GFQWPMFIQY ISKSKIGPRK LRITGVELPQ NGFRPTEKIE  480
DTGRRLREYC KRFGVPFEYH ALASKNWETI RLEEFKIRPN EVLAVNSVLR FKNLRDVTPG  540
EEDCPRDGFL KLIRDMKPDV FLSSTINGSF NAPFFATRFK EALFHYSSLF DMFGSTLSKE  600
NPERMHFEGE FFGREVMNVI ACEGVDRVER PETYKQWQVR MMRAGFKQKP VERELVESFR  660
EKMKRWGYHK DFVLDEDSNW FLQGWKGRIL FSSSCWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4532669611374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600943.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A0D3DYK60.0A0A0D3DYK6_BRAOL; Uncharacterized protein
STRINGBo8g114030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein