PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601041.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 258aa    MW: 28876.6 Da    PI: 6.0726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001783105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F ++  L  H  +H
  XP_013601041.1  83 FQCKACKKVFASHQALGGHRASH 105
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.79E-682105No hitNo description
PfamPF139122.3E-982107IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01483110IPR007087Zinc finger, C2H2
SMARTSM003550.09883105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.601.103.2E-4116152No hitNo description
SuperFamilySSF576677.79E-6158185No hitNo description
PfamPF139121.0E-12162186IPR007087Zinc finger, C2H2
SMARTSM003550.65163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQNSSCIDLV MFSSRGQHDE GNMSRPPWKR ERSNHHLNLY PNEDEELANC LVLLSNSGNA  60
YNNNKHGHGK SKTVKKQKTA HVFQCKACKK VFASHQALGG HRASHKKVKG CFASQDKEEE  120
EEEDEYKEDD DEEEEDEDAE EEEEEDKPTA AAHIIARKRS NAHECTVCHR VFSSGQALGG  180
HKRCHWLTPS TYLRMTPLHD SSAVRSQALD QPSLDLNLAC QEYSVDPTTM SVGRDGGGNI  240
HNATSSNSWL KLASGDWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12532PPWKRERS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601041.10.0PREDICTED: zinc finger protein ZAT2-like
TrEMBLA0A0D3DZH40.0A0A0D3DZH4_BRAOL; Uncharacterized protein
STRINGBo8g118200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-24C2H2-like zinc finger protein