PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601431.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 178aa    MW: 20612.9 Da    PI: 9.7467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-051865254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+  n rE+ RR r+++ f+ L +++ +       +l   +  e+A+ Y+ +L
  XP_013601431.1 18 REQRNLREQERRMRMKHLFNILSSHVSPT-----HRLPVPQLIEQATSYMIQL 65
                    8889**********************986.....4888888888888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5441665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-101685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-61879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDREGGREVG EGSSMSSREQ RNLREQERRM RMKHLFNILS SHVSPTHRLP VPQLIEQATS  60
YMIQLKEKVN YLKEKKMTLL GEMGKHSEGL SSSLLPKLSI YSRDSTIQMN LLIDLNMKRV  120
MLHQLLSVFE EEGAEVMNAN TQKLNDRMII YTIIAQAIIS RIGIDPSRIE ERVRDIIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601431.11e-126PREDICTED: uncharacterized protein LOC106308871
RefseqXP_022564387.11e-126transcription factor bHLH167-like
SwissprotF4I4E12e-89BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A0D3DNY41e-125A0A0D3DNY4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDF21e-125A0A3P6FDF2_BRAOL; Uncharacterized protein
STRINGBo8g059520.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.13e-63bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]