PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601550.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 180aa    MW: 19707.5 Da    PI: 10.572
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-184074135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++
  XP_013601550.1 40 CVDCGTNKTPLWRGGPAGPKSLCNACGIKSRKKRQ 74
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-103489IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.0313470IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-123578No hitNo description
Gene3DG3DSA:3.30.50.101.3E-143874IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.81E-113973No hitNo description
PfamPF003202.3E-164074IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSMTEETKTT TKLETAGDSS DVESGNCSSS GSGGDTKKTC VDCGTNKTPL WRGGPAGPKS  60
LCNACGIKSR KKRQAALGIR QEDNNNKIKN KTNNSLPLDH QTIKNRKGES GNVKNKIKTT  120
ESENFISRVN KKSLERASRF LDLGFKVPAM KRSVVEKKRL WRKLGEEERA AVLLMTLSCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190216e-43AK119021.1 Arabidopsis thaliana At4g16141 mRNA for unknown protein, complete cds, clone: RAFL21-34-K14.
GenBankAK2280256e-43AK228025.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL14-54-B16.
GenBankAL1615436e-43AL161543.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43.
GenBankCP0026876e-43CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973406e-43Z97340.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601550.11e-128PREDICTED: GATA transcription factor 17-like
RefseqXP_013680437.11e-128GATA transcription factor 17-like
RefseqXP_013699138.11e-128GATA transcription factor 17-like
SwissprotQ9LIB55e-59GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3A7R41e-127A0A0D3A7R4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6UEQ31e-127A0A3N6UEQ3_BRACR; Uncharacterized protein
STRINGBo1g055120.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.12e-60GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]