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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_013601580.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 631aa MW: 68971.2 Da PI: 6.5165 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91 | 1.1e-28 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
XP_013601580.1 209 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 262
79*******************.********************************7 PP
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| 2 | Response_reg | 76.6 | 9.1e-26 | 30 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l+ y +v+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + G
XP_013601580.1 30 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAEIALSLLRKNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 122
89*********************.***************999889**********************6644.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
XP_013601580.1 123 AVDYLIKPVRIEALKN 138
************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 8.9E-193 | 11 | 623 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 8.4E-41 | 27 | 165 | No hit | No description |
| SuperFamily | SSF52172 | 7.54E-35 | 27 | 152 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 1.4E-29 | 28 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.441 | 29 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 9.8E-23 | 30 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.70E-27 | 31 | 143 | No hit | No description |
| PROSITE profile | PS51294 | 11.323 | 206 | 265 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 6.81E-20 | 207 | 266 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.7E-30 | 208 | 267 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.6E-24 | 209 | 262 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.7E-9 | 211 | 261 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010119 | Biological Process | regulation of stomatal movement | ||||
| GO:0010150 | Biological Process | leaf senescence | ||||
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 631 aa Download sequence Send to blast |
MLNPGQGRGP DSGVAGGSSN SDPFPAGLRV LVVDDDPTCL MILERMLRTC LYRVTKCNRA 60 EIALSLLRKN KNGFDIVISD VHMPDMDGFK LLEHVGLEMD LPVIMMSADD SKSVVLKGVT 120 HGAVDYLIKP VRIEALKNIW QHVVRKKRNE WNVSEHSGSV EETGQREDGD NNSSSANNEG 180 SWRSSRKRKE EEVDEQGGDD KEDTSSLKKP RVVWSVELHQ QFVAAVNQLG VDKAVPKKIL 240 EMMNVPGLTR ENVASHLQKY RIYLRRLGGV SQHQGNMNHS FMTGQDPSFG PLSTLNGFDL 300 QALAAAGQLP AQSLAQLQAA GLARPPSLSK PGMSVDQRSI FSFENPKIRH GQMMNSGGGG 360 NKQMNLLHGV PMGMEPRQFA GGGQMRVQQQ QQQLSGGRAV GQNVQSSGMM MPVGGGPSML 420 QQQQVMLSSS VPRRSETSSG SRVLPAAATT QSVVFNNFSS ELPRNSFPLA NAPGISVSYQ 480 EEVNSSDAKG GAGFGNPSYD IFNDYPQQYN NNNDWDLQNI GMVFNSHQDT TASAAFSSSS 540 STQRTRAEHV QNHHQQQQFP SQSLNHMNGG GSVRVKSERV AETVTCPPAT TLFQEQYNQE 600 DLMSALLKQE GLPLVDNEFD FDGYSLDNIP V |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-22 | 205 | 267 | 1 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00054 | PBM | Transfer from AT4G16110 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_013601580.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | DQ473521 | 1e-153 | DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013601580.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A0D3A7S0 | 0.0 | A0A0D3A7S0_BRAOL; Two-component response regulator | ||||
| STRING | Bo1g055180.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 0.0 | response regulator 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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