PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601785.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 198aa    MW: 22556.7 Da    PI: 9.9776
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702190.94.5e-5961475154
          DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                     + +C+dCGnqakk+C+++RCRtCCk+++f+C+th+kstWvpa++r+++qq ++++ + +++  a+ ++kr re+  + +s+ ss  +       +
  XP_013601785.1   6 GRRCEDCGNQAKKECVYMRCRTCCKTKSFHCQTHIKSTWVPAYRRSQKQQLQTQT-QPHQKGLATINPKRLREQ--HPSSSPSSLGVRI-----H 92 
                     569*****************************************99987666655.445555677777777776..4555555555444.....4 PP

          DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++t+++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+Gi +dqGle+
  XP_013601785.1  93 TSTRHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGIRHDQGLER 147
                     56789***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-556146IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.4E-27950IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-2897145IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK TKSFHCQTHI KSTWVPAYRR SQKQQLQTQT  60
QPHQKGLATI NPKRLREQHP SSSPSSLGVR IHTSTRHFPA ELSSLADFRC VKVSSIDDGK  120
EQYAYQTTVN IGGHVFRGIR HDQGLERVVV DHQSTHHLHN KHHDQGLLPP SSSPCPLMIT  180
SPFTDFMSGT RFSPNQKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0068412e-52AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBankCP0026852e-52CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601785.11e-148PREDICTED: protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SJT84e-90SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A3P6GXU01e-146A0A3P6GXU0_BRAOL; Uncharacterized protein
STRINGBo8g101770.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.13e-82SHI-related sequence3