PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601803.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 328aa    MW: 36460.5 Da    PI: 9.4799
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.13.5e-29170229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkl..deksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQ+++I++R+++Rakle ++kl    k ++pylheSRh hAl+RpRgsgGrF
  XP_013601803.1 170 NEPVFVNAKQFHAIMRRKEQRAKLETQNKLikARKIQQPYLHESRHVHALKRPRGSGGRF 229
                     59***************************711345678*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-32168232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.794169232IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-24171229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-21172194IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-21206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDKKDSFTTA HSTPPYLNTS ISWGLPTESN VQSYAVIESL SLKVHARSKH VLNPTKIGFQ  60
DKDPSSTQST DQSSTEVATT GDDDDDDNHS RQISFSAQPV SSLDSFEKTQ RKGFPNNIKS  120
GSSYTTGTSD IHFAPGKANF SCFGGYLPHA TVWNPKMVGR VPLPLDFIDN EPVFVNAKQF  180
HAIMRRKEQR AKLETQNKLI KARKIQQPYL HESRHVHALK RPRGSGGRFL NTKKLQESRE  240
PKHDTSIQQK DTMGNMSGFV AHQLHASNDL GCSTTSGSDI TSVSDGVRRY EIQLSDCPPQ  300
TKPTMYIHGQ SNDMHGGGRN THHFSVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-16172230460HAPB protein
4g92_A7e-16172230460HAPB protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-121AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601803.10.0PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-8-like
SwissprotQ9LNP61e-135NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A0D3DWS70.0A0A0D3DWS7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GFT80.0A0A3P6GFT8_BRAOL; Uncharacterized protein
STRINGBo8g104770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-132nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]