PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601823.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 256aa    MW: 30136.2 Da    PI: 6.3237
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.6e-212785356
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                    +R+++t+eq+ +Lee++ + +r+p++++++e+A+kl    +++ ++V++WFqN++ +e+
  XP_013601823.1 27 SRWNPTPEQTMVLEEVYSSgTRTPTTQQIQEIASKLqkygRIEGKNVFYWFQNHKSRER 85
                    7*****************99*************************************98 PP
2Wus_type_Homeobox1101.4e-352687364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+PtpeQ ++Lee+y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k
     XP_013601823.1 26 HSRWNPTPEQTMVLEEVYSSGTRTPTTQQIQEIASKLQKYGRIEGKNVFYWFQNHKSRERLK 87
                       68**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.2562287IPR001356Homeobox domain
SuperFamilySSF466898.55E-132386IPR009057Homeodomain-like
SMARTSM003897.0E-52491IPR001356Homeobox domain
PfamPF000462.2E-182785IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-92785IPR009057Homeodomain-like
CDDcd000862.86E-52885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDIRNDEQI ITGSAGEPKE REKYMHSRWN PTPEQTMVLE EVYSSGTRTP TTQQIQEIAS  60
KLQKYGRIEG KNVFYWFQNH KSRERLKRRR GDQQGVTTIS NVHEETLRKD NVIVDTANKD  120
SSSVSRRRGD HRVIHTSTYL SPSPTHPQKN SIDDGKREVY KRGLEEEKET TSQNQIHPSN  180
TSDFNYHLIT ASKPSQEEEQ QYKLNDDEEE TRKSRTLDLF PVIENQETIG FEEKNTKPNQ  240
LYCNYCYYYE FMPLMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601823.10.0PREDICTED: WUSCHEL-related homeobox 6-like
TrEMBLA0A0D3DX850.0A0A0D3DX85_BRAOL; Uncharacterized protein
STRINGBo8g106350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.19e-48WOX family protein