PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601909.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 239aa    MW: 27263.4 Da    PI: 6.5139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.1e-4151323128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rF Ptdee+v++yL+ k  g +   +++evi++v+i++++PwdLp  ++++++++ w+fF ++++ky++g+r++r+tksg+Wk+tg++ +++
  XP_013601909.1   5 VGLRFIPTDEEIVDHYLRLKNIGGSntSHVDEVISTVNICNFDPWDLPpqSRIASSDQVWHFFGRKESKYNKGERQKRKTKSGFWKKTGNTLPIK 99 
                     7*****************997666645677789**************86458889999************************************* PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k  +++++g k++Lvfy    ++g+k++Wvmhey++
  XP_013601909.1 100 RKrgNRQKIGEKQVLVFY----KNGSKSNWVMHEYHA 132
                     99888889**********....7899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.2023151IPR003441NAC domain
SuperFamilySSF1019412.62E-424151IPR003441NAC domain
PfamPF023651.1E-225131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MENLVGLRFI PTDEEIVDHY LRLKNIGGSN TSHVDEVIST VNICNFDPWD LPPQSRIASS  60
DQVWHFFGRK ESKYNKGERQ KRKTKSGFWK KTGNTLPIKR KRGNRQKIGE KQVLVFYKNG  120
SKSNWVMHEY HASCLSPPQS GAYTICKVQF KGEASEISSS SGVDNVEHSP TPMTNPESPS  180
QFSGFRDHQQ EMQFEAETQT DFEELLSYDL SSLLDYDGDE QIEIASMQKS MTSIFIGHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-23613118139Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
180101KRKTKSGFWKKTGNTLPIKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601909.10.0PREDICTED: NAC domain-containing protein 4-like
SwissprotO819131e-79NAC4_ARATH; NAC domain-containing protein 4
TrEMBLA0A0D3DZB11e-179A0A0D3DZB1_BRAOL; Uncharacterized protein
STRINGBo8g117570.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.15e-79NAC domain containing protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]