PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601975.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 358aa    MW: 41758.9 Da    PI: 5.1016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.97.3e-141932951113
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp G++F+Ptd e+   +Lk+k+ g+++e+  + +e   di+++ P+dLp   + ee++wy+++ ++     g++  r    + W    +d++v+
  XP_013601975.1 193 LPEGLHFRPTDLEMA-IFLKQKALGQPIEACII-PEErhDIFSIPPRDLPG--YPEETHWYYYCWKSM----GQQDPR----SLWTRFREDTAVF 275
                     699**********99.9************9655.44437***********4..34789*******876....566677....48*********** PP

             NAM  94 skkgelvglkktLvfykgra 113
                     +++++ v +k+ +++ + ++
  XP_013601975.1 276 DEEENCVAIKRRFTLVEREE 295
                     *99999******99995333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011917.0E-445114IPR005491ENT domain
PROSITE profilePS511389.88845131IPR005491ENT domain
PfamPF037351.2E-846101IPR005491ENT domain
SuperFamilySSF1586391.83E-546105IPR005491ENT domain
SMARTSM011912.9138197IPR005491ENT domain
SuperFamilySSF1019411.15E-17191337IPR003441NAC domain
PROSITE profilePS5100517.886193337IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADKNDLDPN PPAAEDGTIR FPVKKRSLPE RSLTGFDRAH EPEFKKQKLE QLQRKAYHSA  60
LLASKSESSG TSHKSHIIQK LMNEWNIDQE THISVAHKID HSEKNASWMI PNSLPNPESL  120
VGKRVHARSP DDDSPTNKKI KLHKQAYDLV LYAFNAESPA LSHSRTLIMQ HLLDECNNKA  180
HINKIVEPRS RLLPEGLHFR PTDLEMAIFL KQKALGQPIE ACIIPEERHD IFSIPPRDLP  240
GYPEETHWYY YCWKSMGQQD PRSLWTRFRE DTAVFDEEEN CVAIKRRFTL VEREEECNDV  300
FLPDEEEPPV EEWFIKEISL PPSVADSEFV LCHVVLKKRE KKKEEEEYYD DEEEEEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894560.0AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601975.10.0PREDICTED: uncharacterized protein LOC106309490
TrEMBLA0A3P6GLJ10.0A0A3P6GLJ1_BRAOL; Uncharacterized protein (Fragment)
STRINGBo8g090950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-46NAC family protein