PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602012.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 264aa    MW: 30454.9 Da    PI: 5.2778
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.52.6e-2999186291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p
  XP_013602012.1  99 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 186
                     9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-2799186IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDFRIDNGDA DGMMMTISVE NHNEMGESSG QAMIEQDDDE NRNEIGENSN QEMPLEQDEK  60
VDPDSIPLTV SDMAEEEVQG GDEPYVGQEF ESEAAAHGFY NAYATKVGFV IRVSKLSRSR  120
HDGSPIGRQL VCNKEGYRLP SKRDKVIRQR AETRVGCRAM ILIRKENSGK WVITKFAKEH  180
NHPLMPGRVR RGCIYDQYPN EHDKIQELMQ QLAAEKKRAA TYKRHLEMLF EQIEQHNESL  240
TKRIQHIVDN VRDLDQRDHQ QNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602012.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X3
RefseqXP_022563244.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLA0A0D3DUC50.0A0A0D3DUC5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FXH60.0A0A3P6FXH6_BRAOL; Uncharacterized protein
STRINGBo8g093280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-163FAR1 family protein