PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013602279.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

YABBY

Protein Properties

Length: 188aa MW: 21116.9 Da PI: 9.8459

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013602279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	250.3	3.4e-77	2	164	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ ss++vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ q+ + + + +++l+++++ +++ +++ ++s s+++ XP_013602279.1 2 SIDLSSDRVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLQQSPPTPPI----HQDLQHKQQITTSITRKE-YGSSSRSSNH 91 67789*********************************************9999988863....333444444433333333.3344444455 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s +lsen d+e+pr+pp irPPekrqr Psaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl XP_013602279.1 92 FSATLSENVDREAPRMPP-IRPPEKRQRLPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 164 55688*******99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-72	6	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.22E-7	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSIDLSSDRV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLQQSPPT 60 PPIHQDLQHK QQITTSITRK EYGSSSRSSN HFSATLSENV DREAPRMPPI RPPEKRQRLP 120 SAYNRFIKEE IQRIKAGNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQSVA 180 GQKSNGYY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013602279.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602279.1	1e-140	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-116	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0D3DNG3	1e-139	A0A0D3DNG3_BRAOL; Uncharacterized protein
STRING	Bo8g055830.1	1e-140	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-118	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]