PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602375.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 177aa    MW: 19553.1 Da    PI: 10.0848
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.71.4e-5734131198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa++tlGfe+yveplk yl++yre+eg
  XP_013602375.1  34 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKFYLTRYREMEG 128
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_013602375.1 129 DNK 131
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-5430139IPR009072Histone-fold
SuperFamilySSF471132.95E-4037137IPR009072Histone-fold
PfamPF008086.3E-2840104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-216886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-2187105No hitNo description
PRINTSPR006154.4E-21106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MADSQAKSSG MSPGVGGGGS HESGGDQSPR SMNVREQDRF LPIANISRIM KRGLPANGKI  60
AKDAKETMQE CVSEFISFVT SEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKFYL  120
TRYREMEGDN KGSGKGGESS VSAAGWSARL FLTRSLWKLS SKCFLLAKRR NKSTHKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4834125192Transcription factor HapC (Eurofung)
4g92_B8e-4834125192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876721e-134KC787672.1 Brassica napus transcription factor subunit NF-YB10 (NF-YB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602375.11e-129PREDICTED: nuclear transcription factor Y subunit B-10 isoform X3
SwissprotQ8VYK43e-82NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0D3DSR11e-98A0A0D3DSR1_BRAOL; Uncharacterized protein
STRINGBo8g082690.12e-99(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-66nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]