PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602592.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 215aa    MW: 24632.5 Da    PI: 10.2867
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-3059115259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     ++++YkeC+kNhA+s+Ggh+vDGC+Efmp  geegt  alkCaAC CHR+FHR+ev e
  XP_013602592.1  59 QETKYKECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLGALKCAACSCHRSFHRKEVYE 115
                     5789*************************9.999********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.1E-2861113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2362113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-2762113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.43363112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.81E-18138211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-26146210IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-25149206IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEHGGKCNAI ASKTKISTKT LEAKPHTKSY PKAKPGSDPT LPPFLVKKEN HKLSSRGDQE  60
TKYKECQKNH AVSTGGHVVD GCCEFMPGGE EGTLGALKCA ACSCHRSFHR KEVYEHINST  120
QELMSPAFYR SGSLHKAMIQ SRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE  180
EEIDKFCRLV NLRRQVFKVW MHNNKQTMKR IGNTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-181502071875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891892e-55AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602592.11e-161PREDICTED: zinc-finger homeodomain protein 7
SwissprotQ9SVL05e-96ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A0D3DS271e-160A0A0D3DS27_BRAOL; Uncharacterized protein
STRINGBo8g080350.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.12e-98homeobox protein 28