PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013602621.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 315aa MW: 36168.9 Da PI: 7.5621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013602621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	157	205	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++Y k XP_013602621.1 157 QRINHIAVERNRRRQMNEHISSLRSLVPPS---YIQRGDQASIVGGAINYAK 205 699*************************...9**************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.77E-10	155	212	No hit	No description
PROSITE profile	PS50888	15.408	156	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-13	156	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-16	156	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-9	162	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MERFQGHINP CFLDQNADGR SLEAQSFAFK EEEEEESMQD TVPFLQMLQS EEDPLPFTSF 60 KELLSLQNLH NHWELDSYLS HNETYPVSTT SMEVTRQALS SQELPFSRQQ DMTVPSSSST 120 PNSRRKRKII SNNPPEVTRG KRRKTKPSKD IEEIENQRIN HIAVERNRRR QMNEHISSLR 180 SLVPPSYIQR GDQASIVGGA INYAKVLEQV IKSLELQKRT KQSSVVENRV TCVPRIEATL 240 IQNHVNLKVE CRKKQGQLLK GIVSLEKLRL TVLHLNISSL SCSSVSYCFN LKMEDDCKLE 300 SAEEITKVAH QIFDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	143	KRKIISNNPPEVTRGKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013602621.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602621.1	0.0	PREDICTED: transcription factor bHLH67
Swissprot	Q700E4	1e-126	BH067_ARATH; Transcription factor bHLH67
TrEMBL	A0A0D3DUZ6	0.0	A0A0D3DUZ6_BRAOL; Uncharacterized protein
STRING	Bo8g097470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-124	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]