PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602808.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 220aa    MW: 24598.9 Da    PI: 7.8688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06192214223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+ + +L +Hi + H
  XP_013602808.1 192 VCPKCSRGFREPGDLLKHIDKdH 214
                     7******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.5E-14649No hitNo description
PROSITE profilePS510397.931059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.4E-121150IPR000058Zinc finger, AN1-type
PfamPF014286.5E-151349IPR000058Zinc finger, AN1-type
SMARTSM001541.2E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-1091148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.54E-1095149No hitNo description
PROSITE profilePS510397.889100147IPR000058Zinc finger, AN1-type
PfamPF014287.1E-8103143IPR000058Zinc finger, AN1-type
SMARTSM001540.02103144IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.016191219IPR007087Zinc finger, C2H2
PROSITE patternPS000280193215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDDCKQ IDFLPFTCDR CTQVFCLDHR SYNNHNCPKG NRGDVTVVIC  60
PLCGKGVRLN PDEDPNITWE KHVNTDCDPS SYEETVEKKK KKCPVPRCRE LLTFSNTIRC  120
RDCSVEHCLK HRFGPDHGCA GPKKPESRWS SLLASAEASI SRLGADLSQK LQFANGNSEK  180
MPEKNGKVTV DVCPKCSRGF REPGDLLKHI DKDHHGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894570.0AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602808.11e-162PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_013710050.11e-162zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-130SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A0D3DTY81e-161A0A0D3DTY8_BRAOL; Uncharacterized protein
STRINGBo8g091910.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]