PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602839.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 734aa    MW: 82125.4 Da    PI: 6.8405
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-1894148256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++ ++++++q++e+e++F+ n++p+ +++++L+++lgLt  qVk+WFqNrR + k
  XP_013602839.1  94 KRLHRHSTHQIQEMEAFFKVNPHPNDDDKTRLSEELGLTPLQVKFWFQNRRNQIK 148
                     4457899********************************************8876 PP
2START148.75.1e-472504752206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     la ++ qel k+ + +ep+W+k        s+n+d++ +                 ++ ea+ra +vv+m++ +lv+ +ld   +W+e++     
  XP_013602839.1 250 LAVSCVQELAKMCATNEPLWSKKGsendrISLNEDVYKK------MfqwpsvddnhFRREASRANTVVIMNSITLVNAFLDAD-KWSEMFCsivs 337
                     578899***************998566644444444444......233344577778**************************.******999*9 PP

                     EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTCE CS
           START  78 kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksngh 161
                     +a+t++ i sg     g l lm+aelq+lsplvp R+ +f+Ry +q  +ag+w+ivd  vd   kp +    + ++ R    pSg++i+++sng+
  XP_013602839.1 338 RAKTIQIIYSGvsgasGSLLLMYAELQVLSPLVPtREIYFLRYVKQnAEAGKWMIVDFPVDGLIKPASgittTDQYRR---KPSGFIIQDMSNGY 429
                     *************************************************************99999888775555555...************** PP

                     EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     s++twvehv+++++++ h ++r  v+sg+a+ga +w+a l+rqce+
  XP_013602839.1 430 SQITWVEHVEVEEKHVhHKMVREYVESGAAFGAERWLAVLRRQCER 475
                     ****************99**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1876151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-1890144IPR009057Homeodomain-like
PROSITE profilePS5007116.48790150IPR001356Homeobox domain
SMARTSM003891.3E-1791154IPR001356Homeobox domain
CDDcd000863.78E-1892151No hitNo description
PfamPF000464.3E-1594148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084845.676240478IPR002913START domain
SuperFamilySSF559613.98E-31241477No hitNo description
CDDcd088751.59E-101244474No hitNo description
SMARTSM002347.6E-34249475IPR002913START domain
PfamPF018522.5E-39250475IPR002913START domain
SuperFamilySSF559611.1E-7495683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP NFKRSTFLNP NFSYVIPKEE  60
YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS THQIQEMEAF FKVNPHPNDD  120
DKTRLSEELG LTPLQVKFWF QNRRNQIKTQ QDRTDNVMLK AENETLKTEN RKLQFDLQRL  180
SCSSCGGSRE KLHLENSRLR QELDRLHSIA SLMNPCLPPP QTARLFPDMN DNITNNLLIT  240
EEDKAIAMDL AVSCVQELAK MCATNEPLWS KKGSENDRIS LNEDVYKKMF QWPSVDDNHF  300
RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIIYSGVS GASGSLLLMY  360
AELQVLSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL IKPASGITTT DQYRRKPSGF  420
IIQDMSNGYS QITWVEHVEV EEKHVHHKMV REYVESGAAF GAERWLAVLR RQCERMASLM  480
ATNITDLGVI PSVEAKRKLM KLSQSMVRTY CLTISNSYGQ ALSESPKETV IITTRKVCGG  540
VVLCGVSTTL LPYSHHQVFD LLRHDHGRSQ MEMLFSENPF QEVAHIANGS HPGNCISLLH  600
FHGASSSNNV EWMLQETCTD NSGSLVVYST VHANAVQLAM NGEDPSRISL LPLGFSVVPV  660
NQPHVVEGIS VNLDSCLLTV AIQVLVSNAT TAALNLSTTA INNRICSTVY RISSALGSPL  720
LPEIPSSFKQ EISN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602839.10.0PREDICTED: homeobox-leucine zipper protein HDG4
RefseqXP_013741032.10.0homeobox-leucine zipper protein HDG4-like
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A078F6410.0A0A078F641_BRANA; BnaC08g10960D protein
STRINGBo8g049710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]