PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013602952.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 381aa MW: 41536.6 Da PI: 6.4138

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013602952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1e-06	277	315	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L XP_013602952.1 277 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 315 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.782	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-6	276	319	No hit	No description
SuperFamily	SSF47459	1.7E-11	276	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0071	276	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-9	280	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC 60 KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ 120 DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS 180 WANNNINPNH QASHGLINSF SANTNSLPFW NSSLTTNLNN TTQNSYVTTP LIIPPRGDDK 240 TKKTRGQSES LKRGKYNEPA SKKQRVTTPS PLPNFKVRKE NLRDQITSLQ QLVSPFGKTD 300 TASVLQEAIE YIKFLHDQVT VLSTPYMKQG APIHQQQQDG NDNQELRAHG LCLVPISSTF 360 PVANETTADF WTPTFGGNNF R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC  60
KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS  180
WANNNINPNH QASHGLINSF SANTNSLPFW NSSLTTNLNN TTQNSYVTTP LIIPPRGDDK  240
TKKTRGQSES LKRGKYNEPA SKKQRVTTPS PLPNFKVRKE NLRDQITSLQ QLVSPFGKTD  300
TASVLQEAIE YIKFLHDQVT VLSTPYMKQG APIHQQQQDG NDNQELRAHG LCLVPISSTF  360
PVANETTADF WTPTFGGNNF R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013602952.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602952.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X3
Swissprot	Q94JL3	0.0	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A0D3AAS5	0.0	A0A0D3AAS5_BRAOL; Uncharacterized protein
STRING	Bo1g098400.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]