PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603012.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 380aa    MW: 41408.4 Da    PI: 6.2293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21e-062763141154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  XP_013603012.1 276 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 314
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.782265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-6275318No hitNo description
SuperFamilySSF474591.7E-11275332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9279322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC  60
KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS  180
WANNNINPNH QASHGLINSF SANTNSLPFW NSSLTTNLNN TTQNSYVTTP LIIPPRGDDK  240
TKTRGQSESL KRGKYNEPAS KKQRVTTPSP LPNFKVRKEN LRDQITSLQQ LVSPFGKTDT  300
ASVLQEAIEY IKFLHDQVTV LSTPYMKQGA PIHQQQQDGN DNQELRAHGL CLVPISSTFP  360
VANETTADFW TPTFGGNNFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603012.10.0PREDICTED: transcription factor bHLH112-like isoform X4
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A3N6SK070.0A0A3N6SK07_BRACR; Uncharacterized protein
STRINGBo1g098400.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]