PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603044.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 599aa    MW: 68062.8 Da    PI: 5.1382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.11.9e-1212245941374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+a++s d+++a + L++++e++s++gd++qRl  +f++AL+ar+++    ++k+ +    s++++++ l+a+k f++++P+l +++
  XP_013603044.1 224 MRNLLMQCAQAMASFDQSRAFEKLKEIREHSSSHGDATQRLGYHFANALEARITG----TMKTPAFDVLSRTSMVDILKAYKEFVQACPTLAMCY 314
                     579***************************************************9....77777777777788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      taN++I e +++++++Hi+Df+i +G+QWp+L+qaLa+Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+n+ +ak++++
  XP_013603044.1 315 YTANRTIFELASKATTLHIVDFGILYGFQWPCLIQALAARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEYNF-IAKAWDT 408
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl ++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+
  XP_013603044.1 409 ITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLCRDINPDLFVFAEINGTYNSPFFLTRFREAMFHCSSLFDMFESNISEENDCRT 503
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  XP_013603044.1 504 LVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 594
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.266198574IPR005202Transcription factor GRAS
PfamPF035146.5E-119224594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSRFTCFKE SESQNLSSPT ESTESHNPSP  60
TESTVCSTNH PVLKYINDML MEEDIEEQSC MLEDSLALQA AERSFFEVLQ EDQNPLQDDS  120
SLENFSPLHQ PTSGFTGSPE ISEESTRRYR LRDDDGDEED DLEGGRKSKL PAISVVDELA  180
EKLEEVLLVC QKNDHGEATP NKTGRAKGSL NRSKPQKSDQ PVDMRNLLMQ CAQAMASFDQ  240
SRAFEKLKEI REHSSSHGDA TQRLGYHFAN ALEARITGTM KTPAFDVLSR TSMVDILKAY  300
KEFVQACPTL AMCYYTANRT IFELASKATT LHIVDFGILY GFQWPCLIQA LAARPGGPPK  360
LRVTGIELPQ PGFRPSERVE ETGRRLKRFC DKFSVPFEYN FIAKAWDTIT LDELVINSGE  420
TTVVNCILRL QYTPDETVSL NSPRDTALKL CRDINPDLFV FAEINGTYNS PFFLTRFREA  480
MFHCSSLFDM FESNISEEND CRTLVERELI IKDAMSVIAC EGAERFARPE TYKQWQVRIL  540
RAGFRPAKLN KQIMKEGKEL VRERYHKDFV IDNDNHWMFQ GWKGRVLYAL SCWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-442285948375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603044.10.0PREDICTED: scarecrow-like protein 30 isoform X1
RefseqXP_013671999.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A0D3A8U70.0A0A0D3A8U7_BRAOL; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]