PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603051.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 556aa    MW: 63155.9 Da    PI: 6.4365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.41.5e-1211815511374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+a++s d+++a + L++++e++s++gd++qRl  +f++AL+ar+++    ++k+ +    s++++++ l+a+k f++++P+l +++
  XP_013603051.1 181 MRNLLMQCAQAMASFDQSRAFEKLKEIREHSSSHGDATQRLGYHFANALEARITG----TMKTPAFDVLSRTSMVDILKAYKEFVQACPTLAMCY 271
                     579***************************************************9....77777777777788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      taN++I e +++++++Hi+Df+i +G+QWp+L+qaLa+Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+n+ +ak++++
  XP_013603051.1 272 YTANRTIFELASKATTLHIVDFGILYGFQWPCLIQALAARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEYNF-IAKAWDT 365
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl ++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+
  XP_013603051.1 366 ITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLCRDINPDLFVFAEINGTYNSPFFLTRFREAMFHCSSLFDMFESNISEENDCRT 460
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  XP_013603051.1 461 LVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 551
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.266155531IPR005202Transcription factor GRAS
PfamPF035145.2E-119181551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MLFCKYPLMG SDSTTVLDLA ANQGTILTPE PAASPVSKNL NLRTFLLRPN LSLALQAAER  60
SFFEVLQEDQ NPLQDDSSLE NFSPLHQPTS GFTGSPEISE ESTRRYRLRD DDGDEEDDLE  120
GGRKSKLPAI SVVDELAEKL EEVLLVCQKN DHGEATPNKT GRAKGSLNRS KPQKSDQPVD  180
MRNLLMQCAQ AMASFDQSRA FEKLKEIREH SSSHGDATQR LGYHFANALE ARITGTMKTP  240
AFDVLSRTSM VDILKAYKEF VQACPTLAMC YYTANRTIFE LASKATTLHI VDFGILYGFQ  300
WPCLIQALAA RPGGPPKLRV TGIELPQPGF RPSERVEETG RRLKRFCDKF SVPFEYNFIA  360
KAWDTITLDE LVINSGETTV VNCILRLQYT PDETVSLNSP RDTALKLCRD INPDLFVFAE  420
INGTYNSPFF LTRFREAMFH CSSLFDMFES NISEENDCRT LVERELIIKD AMSVIACEGA  480
ERFARPETYK QWQVRILRAG FRPAKLNKQI MKEGKELVRE RYHKDFVIDN DNHWMFQGWK  540
GRVLYALSCW KPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-451855518375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603051.10.0PREDICTED: scarecrow-like protein 30 isoform X2
RefseqXP_013672000.10.0scarecrow-like protein 30 isoform X2
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A0D3A8U70.0A0A0D3A8U7_BRAOL; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.30.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]