PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603073.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 284aa    MW: 32435.8 Da    PI: 6.6411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-1595146155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  XP_013603073.1  95 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKKLE 146
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-1493148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-1393150No hitNo description
SuperFamilySSF474594.84E-1794157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1295146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPLESVVYPQ DSLGYPSTCK YFMFHDLYYQ EEVVVARDTE EDRQWRDYHQ YPLLPSLEEE  60
LGLPAIDMES PPPLQQRRKR RRTRSNKNVE DIENQRMTHI AVERNRRKQM NEYLAVLRSL  120
MPSSYAQRGD QASIVGGAIN YVKKLEHILQ SMEPNRTTTI PHEANTSTSS LVDPFSDFFS  180
FPQYSTKSSS ITEGSSSPAE IEVTVAEGHA NIKIMAKKKP KQLLKLVASI QSLRLALLHL  240
NVTTLDNSIL YSISVKVEEG SQLTTVDDIA TALNKIMRRI QEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581QRRKRRR
27781RKRRR
37782RKRRRT
495106RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603073.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-146BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D3DQY60.0A0A0D3DQY6_BRAOL; Uncharacterized protein
STRINGBo8g071490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-135bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]