PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603164.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 240aa    MW: 26154.7 Da    PI: 8.4034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+
  XP_013603164.1   2 SCNGCRVLRKGCSESCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_013603164.1  97 AVETVLR 103
                     *998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9471107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQS  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSSRPI PELLTRDAGF  120
GGFPSPTSDE ASEMLNDSGD RSAYHHCRFS SSRTRPTTSP PKRKRLASEQ QQRPSSKLDL  180
SLLPTFPIKT TPLKEETVRP ETPSMYSGES VTTTPFMDNI AGERFVRVGG ETTKLLNLFA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603164.11e-178PREDICTED: LOB domain-containing protein 38-like
RefseqXP_013691392.11e-178LOB domain-containing protein 38-like
SwissprotQ9SN231e-127LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0D3DRR21e-176A0A0D3DRR2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GA181e-176A0A3P6GA18_BRAOL; Uncharacterized protein
STRINGBo8g079200.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-121LOB domain-containing protein 38