PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603284.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 28462.5 Da    PI: 6.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-10112158455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er RR+++ ++f  L  llP +     +K +K+++L  A+  +k+Lq
  XP_013603284.1 112 EHVIAERERREKLSEKFIALSALLPGL-----TKADKITVLDDAISRLKQLQ 158
                     699***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15111174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-15112173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-9113162No hitNo description
SMARTSM003535.8E-12114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDEDFFLTDF SPEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK  60
INNKPRVIFF YFSSNVSSSP AREDIIMDQL ARRGTKRKSC SPAKRSPVFA KEHVIAERER  120
REKLSEKFIA LSALLPGLTK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV  180
KKSKVFFDEG TFLSSSSSSD HEQFGQPLPE IEAKVSQNEV LIRIHCEKSK GSMIDILNTI  240
ENFQLRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RRGTKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603284.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603284.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF161e-117BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A0D3DVY81e-179A0A0D3DVY8_BRAOL; Uncharacterized protein
STRINGBo8g100890.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]