PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603362.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 117aa    MW: 12826.7 Da    PI: 9.9675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.7e-142441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +k+g+WvAeIr+p   +kr r +lg++ ta  Aa+a++ a  +l+g
  XP_013603362.1  2 RKWGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 44
                    46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.335152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-26153IPR001471AP2/ERF domain
CDDcd000183.03E-23154No hitNo description
SMARTSM003809.6E-28158IPR001471AP2/ERF domain
PfamPF008475.5E-8244IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRL WLGSYTTAVA AARAYDTAVF YLRGPSARLN FPDLLFQDEG  60
HRSAAAAAVD MPATLIREKA AEVGARVDAL LACSAKSRSP SSPVLVEKPD LNQIPES
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603362.11e-80PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC309e-60RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0D3DK423e-79A0A0D3DK42_BRAOL; Uncharacterized protein
STRINGBo8g019370.15e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-50related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]