PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603502.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26426.1 Da    PI: 10.1187
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-251059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifs+t+kly+++s
  XP_013603502.1 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSNTDKLYDFAS 59
                    8***********************************************86 PP
2K-box76.66.5e-2681171999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +++ + +q+e++ L++e+++Lq+++R+ +G +L+ Ls+keL+++e+qLe sl+ iR kK+++l+++i+el +k + +++en +L++k++
  XP_013603502.1  81 NPASEVKFWQREATTLRQELHSLQETHRKQMGHQLNGLSVKELHNIESQLEMSLRGIRMKKEQILTNEIKELTRKRNLVHHENLELSRKVQ 171
                     567889***********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.319161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002653.43E-39278No hitNo description
SuperFamilySSF554559.55E-31290IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.41586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSN TDKLYDFASS  60
SMKSTIERFN KTKMEQQQLL NPASEVKFWQ REATTLRQEL HSLQETHRKQ MGHQLNGLSV  120
KELHNIESQL EMSLRGIRMK KEQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL  180
HKKAYAVSIR NELGTRDIED TADESHAQVR LQLSLPEQSH YETSTNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19169169MEF2C
5f28_B1e-19169169MEF2C
5f28_C1e-19169169MEF2C
5f28_D1e-19169169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603502.11e-166PREDICTED: agamous-like MADS-box protein AGL17
SwissprotQ388401e-137AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLA0A397YDR61e-162A0A397YDR6_BRACM; Uncharacterized protein
STRINGBra039921.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-139AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]