PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013603574.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 144aa MW: 16697 Da PI: 8.1902

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013603574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.5e-17	27	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ d +++++ +p +f+++ ++ s +++++++g sWevk+ + +++ y+ ++GW++Fv++n L +++ v+F+++g ++f +v XP_013603574.1 27 FFKIFQGDDLSSESMRAFPYDFIRNVPQND-YSSNMVIRTQWGISWEVKV--SMNPRFyYMEKRGWNQFVNDNALGDKELVTFTHTGLMCF--NV 116 8999988899999999*****8885444.45589**********..999999566669******************9998999..88 PP EEE- CS B3 95 kvfr 98 k+++ XP_013603574.1 117 KIYE 120 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.08E-17	21	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-17	23	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-15	26	119	No hit	No description
Pfam	PF02362	1.6E-15	27	120	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.308	27	122	IPR003340	B3 DNA binding domain
SMART	SM01019	8.7E-19	27	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MMFPKEREIG SSSGLGQGEV DVKNLSFFKI FQGDDLSSES MRAFPYDFIR NVPQNDYSSN 60 MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVKIYE 120 ENGKELVTPR RPRTMASLSK CSSF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013603574.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603574.1	1e-105	PREDICTED: B3 domain-containing protein At3g17010-like
Swissprot	Q9LSP6	3e-43	Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBL	A0A0D3DNY9	2e-98	A0A0D3DNY9_BRAOL; Uncharacterized protein
STRING	Bo8g059570.1	4e-99	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	1e-45	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]